molecular formula C12H13ClN4 B1678524 Pyrimethamine CAS No. 58-14-0

Pyrimethamine

Cat. No.: B1678524
CAS No.: 58-14-0
M. Wt: 248.71 g/mol
InChI Key: WKSAUQYGYAYLPV-UHFFFAOYSA-N
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Description

Pyrimethamine is a synthetic compound that belongs to the class of folic acid antagonists. It is primarily used as an antiparasitic agent to treat and prevent diseases such as toxoplasmosis and malaria. This compound works by inhibiting the enzyme dihydrofolate reductase, which is crucial for the synthesis of tetrahydrofolic acid, an essential component for DNA and RNA synthesis in many organisms .

Preparation Methods

Synthetic Routes and Reaction Conditions: Pyrimethamine can be synthesized through a multi-step process involving the condensation of 4-chlorobenzaldehyde with ethyl acetoacetate to form 4-chlorocinnamic acid. This intermediate is then cyclized with guanidine to produce this compound .

Industrial Production Methods: In industrial settings, this compound is produced using high-pressure homogenization and nanoprecipitation techniques to improve its bioavailability and pharmacokinetic profile . These methods ensure the production of stable nanosuspensions with submicron particle sizes, enhancing the drug’s dissolution rate and therapeutic efficacy.

Chemical Reactions Analysis

Types of Reactions: Pyrimethamine undergoes various chemical reactions, including:

Common Reagents and Conditions:

Major Products: The major products formed from these reactions include various this compound derivatives with altered pharmacological properties .

Mechanism of Action

Pyrimethamine exerts its effects by inhibiting the enzyme dihydrofolate reductase, which is essential for the conversion of dihydrofolate to tetrahydrofolate. Tetrahydrofolate is necessary for the synthesis of purines and pyrimidines, which are building blocks of DNA and RNA. By blocking this pathway, this compound prevents the replication and growth of parasitic organisms .

Comparison with Similar Compounds

Uniqueness: this compound is unique in its high selectivity for protozoal dihydrofolate reductase, making it particularly effective against parasitic infections. Its ability to be used in combination with other drugs, such as sulfadiazine, enhances its therapeutic efficacy and reduces the likelihood of resistance development .

Biological Activity

Pyrimethamine is a well-known antimicrobial agent primarily used in the treatment of malaria and certain parasitic infections. Its biological activity extends beyond its traditional applications, revealing potential therapeutic roles in oncology and other diseases. This article explores the biological mechanisms, efficacy, and clinical implications of this compound, supported by recent research findings.

This compound functions primarily as an inhibitor of dihydrofolate reductase (DHFR), an enzyme critical for folate metabolism. By inhibiting DHFR, this compound disrupts the synthesis of nucleic acids, leading to impaired cellular proliferation in susceptible organisms such as Plasmodium falciparum and certain cancer cells.

Key Findings on Mechanism:

  • Inhibition of STAT3 Activity : Recent studies have shown that this compound inhibits the transcriptional activity of Signal Transducer and Activator of Transcription 3 (STAT3) without significantly affecting its phosphorylation or nuclear localization. This inhibition is linked to a deficiency in reduced folate due to DHFR inhibition .
  • Cellular ATP Levels : this compound treatment has been associated with a significant reduction in cellular ATP levels, indicating its impact on energy metabolism. A study demonstrated a 75% reduction in ATP levels after treatment with 10 μM this compound, which was comparable to lower doses of methotrexate .

Biological Activity Spectrum

The biological activity spectrum of this compound includes various effects on different cell types and conditions:

Activity Target/Organism Effect
AntimalarialPlasmodium falciparumInhibition of folate synthesis
AnticancerVarious cancer cell linesInhibition of STAT3 transcriptional activity
ImmunomodulatoryHPV-infected cellsPotential therapeutic effects in HPV-related cancers
AntimicrobialBacterial infectionsBroad-spectrum antimicrobial effects

Clinical Applications and Case Studies

This compound has been evaluated in various clinical settings beyond its traditional use for malaria:

  • Cancer Therapy :
    • Clinical trials are investigating the efficacy of this compound in treating malignancies driven by aberrant STAT3 signaling, such as chronic lymphocytic leukemia and breast cancer. These studies aim to assess both safety and biological activity in patients .
  • Combination Therapies :
    • The drug is being explored for use in combination therapies to enhance treatment efficacy against resistant strains of parasites and cancer cells. Its role as a DHFR inhibitor positions it as a valuable component in multi-drug regimens .

Resistance Mechanisms

Resistance to this compound, particularly in malaria treatment, has been attributed to mutations in the genes encoding DHFR and dihydropteroate synthase (DHPS). Understanding these resistance mechanisms is crucial for developing effective treatment strategies:

  • Resistance Markers : Genetic studies have identified specific mutations that confer resistance, complicating treatment regimens and necessitating ongoing surveillance .

Q & A

Basic Research Questions

Q. How does pyrimethamine inhibit dihydrofolate reductase (DHFR), and what experimental models are used to validate its efficacy?

this compound competitively inhibits DHFR by binding to its active site, disrupting folate metabolism and nucleotide synthesis. Experimental validation typically involves:

  • Enzyme inhibition assays : Measuring IC50 values using recombinant DHFR enzymes (e.g., from Plasmodium falciparum) under varying this compound concentrations .
  • Cell-based assays : Assessing parasite growth inhibition in P. falciparum cultures or Escherichia coli models with DHFR complementation systems .
  • Flow cytometry : Quantifying cell cycle arrest in cancer models (e.g., colorectal cancer cells) to link DHFR inhibition to antiproliferative effects .

Q. What pharmacokinetic properties of this compound are critical for optimizing dosing regimens in preclinical studies?

Key properties include:

  • Bioavailability : this compound’s weak base nature (pKa ~7) limits solubility at gastric pH, requiring formulation adjustments (e.g., solid dispersions) to enhance dissolution .
  • Cerebrospinal fluid (CSF) penetration : this compound achieves 25–50% of plasma concentrations in CSF, critical for treating toxoplasmosis .
  • Metabolic stability : Hepatic CYP450 metabolism necessitates monitoring for drug-drug interactions in combination therapies . Pharmacokinetic studies use HPLC or gas chromatography (e.g., Hewlett-Packard systems) with electron-capture detection for precision .

Q. How are this compound-resistant mutants generated in laboratory settings, and what genetic markers are monitored?

Resistance is induced via:

  • Stepwise drug pressure : Serial passage of parasites (e.g., Plasmodium or Neospora caninum) in increasing this compound concentrations, followed by cloning via limiting dilution .
  • Site-directed mutagenesis : Introducing mutations (e.g., S108N, C59R, N51I, I164L) in P. falciparum DHFR to replicate clinical resistance . Resistance is confirmed using allele-specific PCR or sequencing to detect mutations linked to reduced drug binding .

Advanced Research Questions

Q. What evolutionary pathways explain the emergence of high-level this compound resistance in malaria parasites?

Resistance arises through sequential mutations in dhfr:

  • Primary mutation : S108N confers low-level resistance (IC50 increases 10–100×).
  • Secondary mutations : C59R and N51I amplify resistance (IC50 >1,000×).
  • Tertiary mutation : I164L (common in Southeast Asia) elevates IC50 >10,000× but is rare in Africa due to fitness costs . Computational models (e.g., fixation probability based on mutational spectra) predict dominant pathways (e.g., S108N → C59R → N51I → I164L) .

Q. How does this compound induce senescence in colorectal cancer (CRC) cells, and what molecular pathways are involved?

this compound triggers S-phase arrest and senescence via:

  • p38MAPK-p53 axis activation : Phosphorylation of p53 upregulates p21, halting cell cycle progression .
  • Senescence-associated β-galactosidase (SA-β-gal) : Used as a biomarker in staining assays .
  • RNA-seq and Western blotting : Confirm downregulation of cyclins (e.g., Cyclin A2) and upregulation of senescence markers .

Q. What synergies exist between this compound and sulfonamides, and how are these interactions quantified?

Synergistic effects are evaluated via:

  • Isobologram analysis : Calculating combination indices (CI <1 indicates synergy) .
  • Lesion reduction assays : In Neospora caninum models, combining this compound with sulfadiazine reduces cyst production by >90% . Mechanistically, sulfonamides inhibit dihydropteroate synthase (DHPS), complementing DHFR inhibition .

Q. How can genetic surveillance data inform strategies to mitigate this compound resistance in endemic regions?

  • Allele frequency monitoring : Tracking mutations (e.g., S108N, C59R) in dhfr across geographic regions to detect emerging resistance .
  • Fitness cost assessments : Mutations like I164L reduce parasite viability in low-drug environments, guiding cyclical drug-use policies .
  • Cross-resistance profiling : Testing resistance to cycloguanil or chlorproguanil to identify collateral sensitivity .

Q. Methodological Guidance

Q. What statistical approaches are optimal for analyzing this compound resistance data in parasite cultures?

  • Mann-Whitney U test : Compare lesion counts or growth rates between drug-treated and control groups .
  • Linear regression : Model dose-response curves for IC50 determination in enzyme inhibition assays .
  • Fixation probability models : Simulate mutation trajectories using empirical mutational spectra .

Q. How can researchers address contradictions in this compound’s apoptotic vs. senescent effects across cancer models?

  • Context-dependent protocols : Apoptosis in melanoma vs. senescence in CRC may reflect cell-type-specific p53 status or treatment duration .
  • Dose-response profiling : Test concentrations (e.g., 5–20 μM) and exposure times (24–96 hrs) to delineate thresholds for senescence .

Q. What ethical and practical considerations apply to clinical trials testing this compound combinations?

  • Teratogenicity risks : this compound is contraindicated in pregnancy due to animal model evidence; trials require stringent contraception protocols .
  • Adverse event monitoring : Severe cutaneous reactions (e.g., Stevens-Johnson syndrome) linked to sulfadoxine combinations necessitate real-time pharmacovigilance .

Properties

IUPAC Name

5-(4-chlorophenyl)-6-ethylpyrimidine-2,4-diamine
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InChI

InChI=1S/C12H13ClN4/c1-2-9-10(11(14)17-12(15)16-9)7-3-5-8(13)6-4-7/h3-6H,2H2,1H3,(H4,14,15,16,17)
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InChI Key

WKSAUQYGYAYLPV-UHFFFAOYSA-N
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Canonical SMILES

CCC1=C(C(=NC(=N1)N)N)C2=CC=C(C=C2)Cl
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Molecular Formula

C12H13ClN4
Record name PYRIMETHAMINE
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DSSTOX Substance ID

DTXSID9021217
Record name Pyrimethamine
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Molecular Weight

248.71 g/mol
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Physical Description

Pyrimethamine is an odorless white crystalline powder. Tasteless. An antimalarial drug., Solid
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Solubility

>37.3 [ug/mL] (The mean of the results at pH 7.4), less than 0.1 mg/mL at 70 °F (NTP, 1992), In water, 10 mg/L (temperature not specified), Practically insoluble in water; slightly soluble in ethanol (about 9 g/L), in dilute HCl (about 5 g/L); soluble in boiling ethanol (about 25 g/L); Very sparingly soluble in propylene glycol and dimethylacetamide at 70 °C, 1.79e-01 g/L
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Mechanism of Action

Pyrimethamine inhibits the dihydrofolate reductase of plasmodia and thereby blocks the biosynthesis of purines and pyrimidines, which are essential for DNA synthesis and cell multiplication. This leads to failure of nuclear division at the time of schizont formation in erythrocytes and liver., Pyrimethamine is an antimalarial drug that has also been used successfully to treat autoimmune diseases such as lymphoproliferative syndrome. In this work, the effect of pyrimethamine (PYR) on the production of free radicals in malaria-infected mice was studied to better understand the drug's immunomodulatory properties. BALB/c and CBA/Ca mice were infected with Plasmodium yoelii 17XL. Seven days after infection, mice were treated with PYR or vehicle and sacrificed 24h later. Treatment with PYR increased superoxide dismutase and glutathione peroxidase activities in erythrocytes and the liver, augmented the levels of nitric oxide in the serum, and upregulated mRNA levels of superoxide dismutase, glutathione peroxidase, catalase, and iNOS in the spleen. In addition, PYR increased lipoperoxidation and protein carbonylation in infected mice. Our results indicate that P. yoelii 17XL reduces oxidative stress in infected cells, while PYR induces it, which is associated with increased parasite elimination. Thus, it is possible that oxidative stress generated by pyrimethamine is also involved in its immunomodulatory mechanism of action., Co-infection of human immunodeficiency virus (HIV) with malaria is one of the pandemic problems in Africa and parts of Asia. Here we investigated the impact of pyrimethamine (PYR) and two other clinical anti-malarial drugs (chloroquine [CQ] or artemisinin [ART]) on HIV-1 replication. Peripheral blood mononuclear cells (PBMCs) or MT-2 cells were infected with HIV(NL4.3) strain and treated with different concentrations of the anti-malarial drugs. HIV-1 replication was measured using p24 ELISA. We show that 10 uM CQ and ART inhibited HIV-1 replication by 76% and 60% in PBMCs, respectively, but not in MT-2 cells. In contrast, 10 uM PYR enhanced HIV-1 replication in MT-2 cells by >10-fold. A series of molecular mechanism studies revealed that PYR increased intracellular HIV gag proteins without affecting the promoter or the reverse transcriptase activity. The effect of PYR was independent of HTLV-1 produced by MT-2 cells. Of interest, PYR treatment led to S-phase accumulation and increased AZT and d4T antiviral activity by ~ 4-fold. Taken together, we show that PYR significantly enhances HIV-1 replication by affecting the cellular machinery. Our results could be relevant for the management of malaria and HIV particularly in regions where HIV-1 and malaria epidemics overlap., Autosomal dominant polycystic kidney disease (ADPKD) is a commonly inherited disorder mostly caused by mutations in PKD1, encoding polycystin-1 (PC1). The disease is characterized by development and growth of epithelium-lined cyst in both kidneys, often leading to renal failure. There is no specific treatment for this disease. Here, we report a sustained activation of the transcription factor signal transducer and activator of transcription 3 (STAT3) in ischemic injured and uninjured Pkd1 knockout polycystic kidneys and in human ADPKD kidneys. Through a chemical library screen, we identified the anti-parasitic compound pyrimethamine as an inhibitor of STAT3 function. Treatment with pyrimethamine decreases cell proliferation in human ADPKD cells and blocks renal cyst formation in an adult and a neonatal PKD mouse model. Moreover, we demonstrated that a specific STAT3 inhibitor, S3I-201, reduces cyst formation and growth in a neonatal PKD mouse model. Our results suggest that PC1 acts as a negative regulator of STAT3 and that blocking STAT3 signaling with pyrimethamine or similar drugs may be an attractive therapy for human ADPKD., The unresponsiveness of metastatic melanoma to conventional chemotherapeutic and biological agents is largely due to the development of resistance to apoptosis. Pyrimethamine belongs to the group of antifolate drugs, and in addition to antiprotozoan effects, it exerts a strong proapoptotic activity, which we recently characterized in human T lymphocytes. However, no data regarding pyrimethamine anticancer activity are available thus far. To this end, we examined the in vitro effects of pyrimethamine on apoptosis, cell cycle distribution, and cell proliferation of human metastatic melanoma cell lines. The in vivo antitumor potential of pyrimethamine was evaluated in a severe combined immunodeficiency (SCID) mouse xenotransplantation model. Our data indicate that pyrimethamine, when used at a clinically relevant concentration, induced apoptosis in metastatic melanoma cells via the activation of the cathepsin B and the caspase cascade (i.e., caspase-8 and caspase-9) and subsequent mitochondrial depolarization. This occurred independently from CD95/Fas engagement. Moreover, pyrimethamine induced a marked inhibition of cell growth and an S-phase cell cycle arrest. Results obtained in SCID mice, injected s.c. with metastatic melanoma cells and treated with pyrimethamine, indicated a significant inhibitory effect on tumor growth. In conclusion, our results suggest that pyrimethamine-induced apoptosis may be considered as a multifaceted process, in which different inducers or regulators of apoptosis are simultaneously implicated, thus permitting death defects of melanoma cells to be bypassed or overcome. On these bases, we hypothesize that pyrimethamine could represent an interesting candidate for the treatment of metastatic melanoma., Pyrimethamine is a folic acid antagonist and has a mechanism of action similar to that of trimethoprim. By binding to and reversibly inhibiting dihydrofolate reductase, pyrimethamine inhibits the reduction of dihydrofolic acid to tetrahydrofolic acid (folinic acid). Pyrimethamine interferes with the synthesis of tetrahydrofolic acid in malarial parasites at a point immediately succeeding that where sulfonamides act. Sulfadoxine, like other sulfonamides, is a structural analog of p-aminobenzoic acid (PABA) and competitively inhibits dihydrofolic acid synthesis which is necessary for the conversion of PABA to folic acid. The combination of sulfadoxine and pyrimethamine results in a synergistic action against susceptible plasmodia.
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Color/Form

Crystals, White scored tablets contains 25 mg pyrimethamine /Daraprim/

CAS No.

58-14-0
Record name PYRIMETHAMINE
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Melting Point

451 to 453 °F (capillary) (NTP, 1992), 233-234 °C (capillary); 240-242 °C (copper block), 233.5 °C
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URL http://www.hmdb.ca/metabolites/HMDB0014350
Description The Human Metabolome Database (HMDB) is a freely available electronic database containing detailed information about small molecule metabolites found in the human body.
Explanation HMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (HMDB) and the original publication (see the HMDB citing page). We ask that users who download significant portions of the database cite the HMDB paper in any resulting publications.

Retrosynthesis Analysis

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Feasible Synthetic Routes

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